PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25570.5
Common NameLR48_Vigan02g009700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 102aa    MW: 11467.5 Da    PI: 4.5401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25570.5genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.92.4e-082253255
             AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                    +lg+f +aeeAa+a+++a+  ++g
  Vang06g25570.5  2 WLGTFESAEEAARAYDHAAFTMRG 25
                    **********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-11134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-15135IPR001471AP2/ERF domain
SMARTSM003808.1E-5139IPR001471AP2/ERF domain
PROSITE profilePS5103213.656133IPR001471AP2/ERF domain
CDDcd000181.21E-15134No hitNo description
PfamPF008471.7E-4225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
LWLGTFESAE EAARAYDHAA FTMRGRVAIL NFPNEYRSHA RVYPQHIPSP SSSITDENAS  60
SSSSITHANG GQQRQVFEFE YLDDKVLEEL LQFEEKNNTE S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-171AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511321.12e-50PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC57e-29ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9TU942e-70A0A0L9TU94_PHAAN; Uncharacterized protein
STRINGGLYMA10G00990.15e-33(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-21ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]